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Archive for the ‘trainee author’ Category

How to choose features or p values for empirical Bayes estimation of the local false discovery rate

1 December 2018 Leave a comment

R functions for combining probabilities using game theory

15 November 2018 Leave a comment

R package for estimating local false discovery rates using empirical Bayes methods

15 October 2018 Leave a comment

Coherent fiducial distributions

20 August 2013 Leave a comment

Estimates of the local FDR

13 February 2013 Leave a comment

Z. Yang, Z. Li, and D. R. Bickel, “Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate,” BMC Bioinformatics 14, art. 87 (2013). published version |  2011 version | 2010 version

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This paper adapts novel empirical Bayes methods for the problem of detecting enrichment in the form of differential representation of genes associated with a biological category with respect to a list of genes identified as differentially expressed. Read more…

MLE of the local FDR

13 February 2013 Comments off

Local FDR estimation for low-dimensional data

18 October 2012 Leave a comment

M. Padilla and D. R. Bickel, “Estimators of the local false discovery rate designed for small numbers of tests,” Statistical Applications in Genetics and Molecular Biology 11 (5), art. 4 (2012). Full article | 2010 & 2012 preprints

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This article describes estimators of local false discovery rates, compares their biases for small-scale inference, and illustrates the methods using a quantitative proteomics data set. In addition, theoretical results are presented in the appendices.